MetaMapp- visualizing metabolomics networks: gut microbiome-metabolome

MetaMapp

Novel tools and approaches are always required to understand omics datasets in biological context. MetaMapp is an idea to understand metabolomics in biochemical view. Since a reaction network exist underlying the metabolic biochemistry, we present the data as network graphs, which can also be integrated with genomics and proteomics datasets. It was developed during my PhD research at FiehnLab at UCDavis, USA.

Barupal et al " MetaMapp: mapping and visualizing metabolomics data by integrating information from pathways and chemical and mass spectral similarity BMC Bioinformatics, 2012

Google Code can be found here

MetaMapp- visualizing metabolomics networks

Saturday, November 6, 2010

gut microbiome-metabolome

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